Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSLQAKILDPRLGSDFPLPQYATPGSAGLDLRAMLKEDSVLGPGQTLLIPTGLSIYIADPGLA-ALVLPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSCWNRGESPFTIAVGERIAQLVLVPVVQAHFELVEAFDESQRGAGGFGHSGSH
2OKD Chain:A ((22-132))
-------------------PTRQSPGAAGYDLYSAY--DYTIPPGERQLIKTDISMSM--PKFCYGRIAPRSGLSLK-GIDIGG--GVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSLD---------------
General information:
TITO was launched using:
RESULT:
Template:
2OKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77211 for 683 contacts (-113.0/contact) +
2D Compatibility (PS) -11681 + (NN) -3767 + (LL) 1452
1D Compatibility (HY) -8000 + (ID) 2150
Total energy: -101357.0 ( -148.40 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_2OKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKD-query.scw
PDB file :
Tito_Scwrl_2OKD.pdb
: