Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYVVLEGVDGAGKSTQVGLLKDRFK--N--ALFTKEPG-GTRMGESLRRIALNE-NISELARAFLFLSDRAEHIESVIKPALKEKKLIISDRSLISGMAYSQFS----SLELNLLATQSVLPEKIILLLINKENLKQRLSLKSLDKIENQGIEKLLTIQQKLKTHAYALQEKFGCEVLELDAQKSAKNLHEKIATFIECVV
2YOG Chain:A ((9-198))
KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE-IKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNY-----------IYE--KVETQKKIYETYKHFAHE------DYWINIDATRKIEDIHNDIVKEVTKIK
General information:
TITO was launched using:
RESULT:
Template:
2YOG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69592 for 1270 contacts (-54.8/contact) +
2D Compatibility (PS) -18432 + (NN) -4321 + (LL) 1576
1D Compatibility (HY) -8800 + (ID) 2200
Total energy: -101769.0 ( -80.13 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_2YOG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YOG-query.scw
PDB file :
Tito_Scwrl_2YOG.pdb
: