Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLSSEEIIKMLPHRYPFLMVDRV---QSYKKGIIECRKNITINEPYFQGHFPQRPIVPGVLMIEMAAQSAALLYILDALDGSLPSLDELTAEKIAEKVGYLASVKNFKFKKIVTPGDQLNITCKSQSKLGHLLEIQVVIRDENKKEVASGRMLVSENGN
2GLV Chain:K ((27-131))
------EHILQILPHRYPMLLVDRITELQANQK--IVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFL--------AFTSLWGFDPEIAKTKIVAFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
2GLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49048 for 610 contacts (-80.4/contact) +
2D Compatibility (PS) -10804 + (NN) -4893 + (LL) 944
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -77451.0 ( -126.97 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2GLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GLV-query.scw
PDB file :
Tito_Scwrl_2GLV.pdb
: