Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYADRDLPGAGGLAVRVIPCLDVDDGRVVKGVNFENLRDAGDPVELAAVYDAEGADELTFLDVTASSSGRATMLEVVRRTAEQVFIPLTVGGGVRTVADVDSLLRAGADKVAVNTAAIACPDLLADMARQFGSQCIVLSVDARTVPVGSAPTPSGWEVTTHGGRRGTGMDAVQWAARGADLGVGEILLNSMDADGTKAGFDLALLRAVRAAVTVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFRELTIGQVKAALAAEGITVR
1THF Chain:D ((3-249))
-------------AKRIIACLDVKDGRVVKGSNFENLRDSGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVD-------GEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKHGVNVR
General information:
TITO was launched using:
RESULT:
Template:
1THF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184505 for 2157 contacts (-85.5/contact) +
2D Compatibility (PS) -27296 + (NN) -13027 + (LL) 140
1D Compatibility (HY) -22800 + (ID) 6550
Total energy: -254038.0 ( -117.77 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1THF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1THF-query.scw
PDB file :
Tito_Scwrl_1THF.pdb
: