Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRLEGRKFLVTGASGGIGQAIVKTMHKAGAILCVSGTKKETLEGVAKLYEKNIYI---LPCNLLNTEEVNQLINRASKLMGGLDGLVCNAGVTQDSLLLRMTDEAWQKVVDINLSSTFKLNREAYKKLTKNNWGRIINISSIIGLTGNAGQANYAASKAGIIAMSKSIAKEVASRNITVNCIAPGFMDTKMTKILTEEQKKKILDNIPMKRMGTGEEIAAGVLFLASDEAKYITGHVLNINGGLFM
4BNW Chain:A ((25-268))
---LQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGI-------RMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
4BNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146388 for 2002 contacts (-73.1/contact) +
2D Compatibility (PS) -25399 + (NN) -9092 + (LL) 1036
1D Compatibility (HY) -18000 + (ID) 5200
Total energy: -203043.0 ( -101.42 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_4BNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BNW-query.scw
PDB file :
Tito_Scwrl_4BNW.pdb
: