Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
1RLJ Chain:A ((11-133))
VQIIFDSKTGNVQRFVNKTGFQQIRKVDE---MDHVDTPFVLVTYTTNFGQVPASTQSFLEKYAHLLLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDVELFTQEVERVVTKSSA------
General information:
TITO was launched using:
RESULT:
Template:
1RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79235 for 971 contacts (-81.6/contact) +
2D Compatibility (PS) -12733 + (NN) -731 + (LL) 624
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -105275.0 ( -108.42 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLJ-query.scw
PDB file :
Tito_Scwrl_1RLJ.pdb
: