Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKDSYTANLFDSNSIKQIDINVKTK
1YN3 Chain:A ((157-254))
--------------------------------------------GSTVPYTITVNGTSQNILSNLTFNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANLINSSDIKSININID--
General information:
TITO was launched using:
RESULT:
Template:
1YN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35313 for 669 contacts (-52.8/contact) +
2D Compatibility (PS) -10431 + (NN) -708 + (LL) 3816
1D Compatibility (HY) -7200 + (ID) 2200
Total energy: -52036.0 ( -77.78 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1YN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YN3-query.scw
PDB file :
Tito_Scwrl_1YN3.pdb
: