Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQ--DYQLFPNMTVYKNITFMA--------EPSKHIDQLIQTLNIN-HLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
4MKI Chain:A ((30-221))
--------------INFSIDDEE--FVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITD--KKVSLKDIRKQVGLVFQYPEYQLFEE-TVFKDIAFGPSNLGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVM-
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118546 for 1360 contacts (-87.2/contact) +
2D Compatibility (PS) -19336 + (NN) -5301 + (LL) 1492
1D Compatibility (HY) -15600 + (ID) 3150
Total energy: -160441.0 ( -117.97 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: