Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLDHEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTNKDLKKQIAAHSYFNEEMIKSASALMVVCSLKPSELLPTSHYMQNLYPESYKVRVIPSF-AQMLGVRFNHSMQKLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEILEERINKPKIVCLIALGKRVAEASKKSRKSKVDAITWL
1NOX Chain:A ((6-205))
----PVLDAKTAALKRRSIRRYRK-DPVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALREAAF-GQAHVEEAPVVLVLYADLEDALAHLDEVIHP-G---VQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGLPS-RAAIPALVALGYPAEEGYPSHRLPLERVVLWR
General information:
TITO was launched using:
RESULT:
Template:
1NOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109893 for 1420 contacts (-77.4/contact) +
2D Compatibility (PS) -21241 + (NN) -4275 + (LL) 788
1D Compatibility (HY) -5600 + (ID) 2050
Total energy: -142271.0 ( -100.19 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1NOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NOX-query.scw
PDB file :
Tito_Scwrl_1NOX.pdb
: