Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIGIFFGTDSGNAEAIAEKISKAIGN----AEVIDVAKAS-KEQFNGFTKVILVAPTAGAGDLQT---DWEDF-LGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTPTDGYHFEASKAVE-GGKFVGLVIDEDNQDDLTDERIAKWVEQVKGSFA-------
1AG9 Chain:A ((1-175))
-AITGIFFGSDTGNTENIAKMIQKQLG-KDVAD-VHDIAKS-SKEDLEAYDILLLGIPTWYYG---EAQCDWDDFF-PTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHLDEILNA
General information:
TITO was launched using:
RESULT:
Template:
1AG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94584 for 1300 contacts (-72.8/contact) +
2D Compatibility (PS) -16825 + (NN) -8406 + (LL) 600
1D Compatibility (HY) -13600 + (ID) 3600
Total energy: -136415.0 ( -104.93 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_1AG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AG9-query.scw
PDB file :
Tito_Scwrl_1AG9.pdb
: