Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYKIIAIDIDGTLLNDTHEITPAVRDSIKAAKAKGVKVVLCTGRPLAGIKKSLIE-LDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAENVNVTYFDGKNMYVPSRKITEITCQDS-LLLGTPL--YHLPVEEAPESIHVSKVMLL-DSPEKITDVIKKLPENIKEKFYVVRSVPYNLEFLQKGVNKGSALASLADKLGVDQSEVMSIGDQENDITMIEYAGMGVAMGNATEHIKEIANYTTTTNNEDGVAQAIQMLILDR |
1NF2 Chain:A ((1-263)) | MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLSR-KCYVVFASGRMLVSTLNVEKKYFKR---TFPTIAYNGAIVYLP-EEGVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKDNEEI-KSYARHSNVDYRVEPNLSELV-SK--MGTTKLLLIDTPE-RLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIVTLTNNDSGVSYVLERIST-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159628 for 2161 contacts (-73.9/contact) +
2D Compatibility (PS) -28269 + (NN) -7104 + (LL) 924
1D Compatibility (HY) -17600 + (ID) 3500
Total energy: -215177.0 ( -99.57 by residue)
QMean score : 0.516
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