Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4JLO Chain:B ((3-203))
--LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKVIQKEDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG--
General information:
TITO was launched using:
RESULT:
Template:
4JLO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65357 for 1518 contacts (-43.1/contact) +
2D Compatibility (PS) -21874 + (NN) -13607 + (LL) 576
1D Compatibility (HY) -18400 + (ID) 4100
Total energy: -122762.0 ( -80.87 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4JLO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLO-query.scw
PDB file :
Tito_Scwrl_4JLO.pdb
: