Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLVATAPR-VAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS-----------------------------------YGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYD-PAQFAMSGVRDA--HVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEVKRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFPEGFNLGREAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMKYVDQQPDLSIKMGITL |
| 3JV7 Chain:A ((1-345)) | MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCH-SDIFVMDMPAAQ---------------------YAYGLPLTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARH--LVPIG-DLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGA-GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFF--MIPFGASVVTPYWG-----------TRSELMEVVALARAGRLDI---HTETFTLDEGPAAYRR-LREGS-IRGRGVVVP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3JV7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180786 for 2696 contacts (-67.1/contact) +
2D Compatibility (PS) -33676 + (NN) -7772 + (LL) 1536
1D Compatibility (HY) -10800 + (ID) 3300
Total energy: -234798.0 ( -87.09 by residue)
QMean score : 0.467
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