Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKDNAVELEERVVAINRVTKVVKGGRRLRFAALVVVGDRNGRVGFGTGKAQEVPEAIRKAVEAAKKNMVEVPMVGTTIPHEVRSEFGGAKVLLKPAVEGAGVAAGGAVRAVIELAGVADITSKSLGSNTPINIVRATVEGLKQLKRAEEVAALRGISVSDLA
1PKP Chain:A ((4-148))
--INPNKLELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEVPIVGTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPINMVRATFDGLKQLK-----------------
General information:
TITO was launched using:
RESULT:
Template:
1PKP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83410 for 1220 contacts (-68.4/contact) +
2D Compatibility (PS) -15544 + (NN) -2252 + (LL) 1972
1D Compatibility (HY) -16800 + (ID) 5450
Total energy: -121484.0 ( -99.58 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_1PKP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PKP-query.scw
PDB file :
Tito_Scwrl_1PKP.pdb
: