Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWM---INNDRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIK----ESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSPQPWKEWRETDKHFDQGNL
4JTR Chain:A ((10-119))
------LNDGHFMPVLGFGTYAPAEVPKSKALEAVKLAIEAGFHHIDSAHVYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKI
General information:
TITO was launched using:
RESULT:
Template:
4JTR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38080 for 698 contacts (-54.6/contact) +
2D Compatibility (PS) -10776 + (NN) 262 + (LL) 648
1D Compatibility (HY) -9600 + (ID) 2050
Total energy: -59596.0 ( -85.38 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_4JTR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JTR-query.scw
PDB file :
Tito_Scwrl_4JTR.pdb
: