Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKHYQTIIIGAGAAGIGFGSAMQRLGLTNFLIIEKGHIGESFLRWPRTT--QFITPSFTTNGFGF--PDLNAVIPDTSPAFSFEKEHLS----GVEYARYLQLVAAHYNLPIQNETSVLSIDKRDSLFVIKTSKGDFSADYLIMATGEFQNPNTIDIKGADLGMHYGQVDNFHIKSDNPFIIIGGNESACDALTHLVYLGNQVELYTDTFGRKESNPDPSISLSPLTKERLKHIQDHKKEYYSISEGKKAIEIKQI-GKQYQVTFDDGSTAESFHKPILSTGFLNTCHLIDGIA-LFEYDKNQLPIVTEDDESTIVNNCFLIGPSLRQRDTIFCYIYKFRQRFVPVINHIAQREGIILDEDTLEFFKENQMYLDNLACCDVNCDC |
| 1GES Chain:A ((3-328)) | -KHYDYIAIGGGSGGIASINRAAMYGQ-KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYG-FD-TTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF-ARFVDA----KTLEVNGETITADHILIATGG--RPSHPDIPGVEYGIDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-------FDPMISETLVEVMNA--EGPQLHTNAIPKAVVKNTDGSLTLELEDGRS-ETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQN-TNIEGIYAVGDNTGAVELTP----VAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GES.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146726 for 2593 contacts (-56.6/contact) +
2D Compatibility (PS) -33652 + (NN) -6296 + (LL) 1124
1D Compatibility (HY) -8400 + (ID) 2550
Total energy: -196500.0 ( -75.78 by residue)
QMean score : 0.414
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