Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREK----LSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIAETFSIILDRINQ
3V9P Chain:A ((23-226))
-ARGKFITFEGID---KTTHLQWFCDRLQERLGPAG-RHVVVTREPGGTRLGETLREILLNQ---PMDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP-----ESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAAL---
General information:
TITO was launched using:
RESULT:
Template:
3V9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53431 for 1426 contacts (-37.5/contact) +
2D Compatibility (PS) -21410 + (NN) -14303 + (LL) 856
1D Compatibility (HY) -10400 + (ID) 3550
Total energy: -102238.0 ( -71.70 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_3V9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9P-query.scw
PDB file :
Tito_Scwrl_3V9P.pdb
: