Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTQVFQGRSFLAEKDFSREEFEYLIDFSAHLKDLKKRGVPHHYLEGKNIALLFEKTSTRTRAAFTTAAIDLGAHPEYLGAN------DIQLG------KKESTEDTAKVLGRMFDGIEFRGFSQ----------RMVEELAEFSGVPVWNGLTDEWHPTQMLADYLTIKENFGK--LEG----ITLVYCGDGRNN-VANSLLVAGTLMGVNVHIFSPKELFPAEE-IVKLAEEYAKESGAHVLVTDNVDEAVKGADVFYTDVWVSMGEEDKFKERVELLQPYQ-VNMELIKKANNDNLIFLHCLPAFHDTNTVYGKDVAEKFGVKEMEVTDEVFRSKYARHFDQAENRMHTIKAVMAATLGNLFIPKV |
3M4N Chain:A ((24-354)) | -------KHFLNTQDWSRAELDALLTQAA----LFKRNKLGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETIT-HPCQELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTNNGVFSHCLPL-----------------RRNVAATDAVMDSPNCIAIDEAENRLHVQKAIMAALV-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3M4N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108840 for 2552 contacts (-42.6/contact) +
2D Compatibility (PS) -32760 + (NN) -14194 + (LL) 2080
1D Compatibility (HY) -20400 + (ID) 5500
Total energy: -179614.0 ( -70.38 by residue)
QMean score : 0.566
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