Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKHDIEKVLISEEEIQKKVKELGAELTSEYQDTFPLAIGVLKGALPFMADLIKHIDTY---------LEMDFMDVSSYGNSTVSSGEVKIIKDLD-TSVEGRDILIIEDIIDSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDYAERYRNLPYIGVLKPAVYES
5BSK Chain:A ((31-208))
----DLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIR---------------------LSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVAVI-------
General information:
TITO was launched using:
RESULT:
Template:
5BSK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131818 for 1143 contacts (-115.3/contact) +
2D Compatibility (PS) -15954 + (NN) -3731 + (LL) 1772
1D Compatibility (HY) -19200 + (ID) 2950
Total energy: -171881.0 ( -150.38 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_5BSK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BSK-query.scw
PDB file :
Tito_Scwrl_5BSK.pdb
: