Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKMMDANEIISFIQNSTKSTPVKVYVKGELEGINFGESAKAFINGNTGVVFGEWSEIQTAIEENQSKIEDYVVENDRRNSAIPMLDLKNIKARIEPGAIIRDQVEIGDNAVIMMGASINIGSVIGEGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVIEPPSAKPVVIEDDVVIGANAVVLEGVTVGKGAVVAAGAIVVN---------------DVEPYTVVAG--TPAKKI---------------KDIDEKTKGKTEIKQELRQL
3EG4 Chain:A ((86-284))---------------------------------------------QSS-WWDKVPSKFDGWTANEFEKAGF---------------------RAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGKNVPGENWGPSLYCAVIVKRADEKTRSKTSINELLRD-


General information:
TITO was launched using:
RESULT:

Template: 3EG4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 900 -151707 -168.56 -908.42
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -168.56
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.578

(partial model without unconserved sides chains):
PDB file : Tito_3EG4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3EG4-query.scw
PDB file : Tito_Scwrl_3EG4.pdb: