Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKGMFFCARAVVPFMKKSKDGAIVNVGSIAGITGAGSSMPYAVSKSAVHGLTKSLAHALAPEIRVSGVAPGAVAT---RWWAGRE--------EKMKSMIG-SLLLQCIAEPDDVAKLICSLIEQES--LTGQIITIDSGQTL
2DTD Chain:A ((108-248))--GYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGLSI


General information:
TITO was launched using:
RESULT:

Template: 2DTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 403 -31517 -78.21 -248.17
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -78.21
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.364

(partial model without unconserved sides chains):
PDB file : Tito_2DTD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2DTD-query.scw
PDB file : Tito_Scwrl_2DTD.pdb: