Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASEFSRAELAAAFEKFEKTVARAAATRDWDCWVQHYTPDVEYIEHAAGIMRGRQRVRAWIQETMTTFPGSHMVAFPSLWSVIDESTGRIICELDNPMLD--------PGDGSVISATNISIITYAGNGQWCRQEDIYNPLRFLRAAMKWCRKAQELGTLDEDAARWMRRHGGP
3I0Y Chain:A ((3-139))
---SESNRQRATGLVQAYYEA----FNRGDWDAMLAFLAEDVAHDLNQGPREIGRAAFASFLQRMNDSYREQ--LRDIVVTANDEGT--RVGAEYVVHGVYHTTDEGLPDANGQTYVLPGGAFFDV-RDGQITRVTNYYNLQEWIAQVS--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3I0Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38490 for 903 contacts (-42.6/contact) +
2D Compatibility (PS) -14492 + (NN) -7855 + (LL) 2684
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -61103.0 ( -67.67 by residue)
QMean score : 0.294
(partial model without unconserved sides chains):
PDB file :
Tito_3I0Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3I0Y-query.scw
PDB file :
Tito_Scwrl_3I0Y.pdb
: