Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVV---GDV----DVEAGGAAADELSGLFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAGKGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQE----LFAKN---PERAARRMV--HVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
2ZTM Chain:A ((6-259))
-----------VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ--HTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASA-NKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRSPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWTA------
General information:
TITO was launched using:
RESULT:
Template:
2ZTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146789 for 2002 contacts (-73.3/contact) +
2D Compatibility (PS) -25917 + (NN) -11435 + (LL) 1244
1D Compatibility (HY) -14800 + (ID) 5000
Total energy: -202697.0 ( -101.25 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTM-query.scw
PDB file :
Tito_Scwrl_2ZTM.pdb
: