Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKNARYAWRLSLGGLLLGLLACAVYLLAVPLGFKYGEIQVGHGLEHEGRIAWDAAGVPHIRAQSLEDGYFLLGYSHARDRLWQMEFARRYAGGTLSEVFGAKTL-----PMDRFARTLGFRRTAEGIYANLDAPTRVLLQRYSDGINAYLELAPAALPLEFSLVRHE-RPGPWGPVDSLS-LHLLYSWTLSANLGMQLQRLALAEHL--DLARINEV-FAPYPGERPPATRDYASLYRSLHGTPDAGKLLGQLPGSNVEGIGSNNWVVSASRSATGKPLLANDPHLRLTNPAAFYLASLKIPGLSLTGANFAGAPLFVIGHNQRIAWGYTNTGSHIQDAYLERVDPQDPRRYLTPDGYRPFETRLERIAVRDGETVSLEVRSTRHGPVISDIYE--------PARLPQAQRDRLVIALAWTGLDR-HDKTFPSLLAINRAEGWEQFLDAAANFGVPPQNMVYADVEGNIGYVSAGRVPLRGADDDLHGLAPSPGWESRYDWVGYVPESAKPRSLNPREGFIATANQRIVPPDNAFDFGHDW-VLPYRYDRI----REWLGGPGQ-RTLE------DSLELQNDEFSS---VMASLLPKMLEQVSDPELRASEAFALLQGWNHQAAADLAAPLIAGYWVRAFTRELLQPRIGTQLLASGWNQRNYDGFLRLILDGQADLRFWCGQEQGCDLKLNQSLRRALDELRAAHGSAPSGWKWGEAHAALAEHVPFHKTPLRALFDLKN-NKGGDNFSVNVGRFDYSDPANPFNTRIAATLRMV--------IDLADFDNSRYALSTRNSGLPFDGATDLNEL-----------W-----ARGAYIRIADDAPDATDRQLVL------RPSASSSGEPRP |
| 4LXR Chain:A ((1-773)) | -SFGRDACSEMSIDGLCQCAPIMSEYEIICP----------------------ANAENPTFRLTIQPKDYVQIMCN-LTDTTDYQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVS-----------PTTLIFE--SDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIE------EMPSHLFDDLENLESIEFGSNKLRQMP--RGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATS---VLGIDIHDNGIEQLPHDVFAHLTN----------VTDINLSANLFRSLPQGLFDHNK-----------HLNEVRLM--NNRVPLATL-PSRLFANQPELQILRLR-AELQSLPGDLFEHSTQITNISLGDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLLT-----GISGD--IFSNL-GNLVTLVMSRNRLRTIDS--RAFVSTNGLRHLH---------LDHNDIDLQQPLLDIMLQT--QINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLRELDLSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALPEDVNNNLVHVDLNDN---------PLVCDCTILWFIQLV-----------RGVHKPQYSRQFKLRTD-----RLVCSQPNVLEGTPVRQIEPQTLICPLDFSKCPRGCNCHVRTYDKALVINCHSGNLTHVPRLPNLHKNMQLMELHLENNTLLRLPSANTPGYESVTSLHLAGNNLTSIDVDQLPTNLTHLDISWNHLQMLNATVLGFLNWRSVKLSGNPWMCDCTAKPLLLFTQDNFERIGDRNEMMCVNAPTRMVELSTNDICP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LXR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142269 for 5146 contacts (-27.6/contact) +
2D Compatibility (PS) -72535 + (NN) -34666 + (LL) 8752
1D Compatibility (HY) -30400 + (ID) 6750
Total energy: -277868.0 ( -54.00 by residue)
QMean score : 0.183
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