Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKEIINVVHGTFTQLRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACN-----LCAVACPVGCISLQKAETEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVYEKHDLLISGPGKNPDYNYYRVAGMAIAGKPKGAAQNEAEPINVKSLLP
1JNR Chain:B ((6-67))
---------------------------------------------------------NPEKCDGCKALERTACEYICPNDLMTLDKEKM-------KAYNREPDMCWECYSCVKMCPQGAIDVRGY-------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JNR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44078 for 346 contacts (-127.4/contact) +
2D Compatibility (PS) -5582 + (NN) -986 + (LL) 7312
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -47284.0 ( -136.66 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_1JNR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JNR-query.scw
PDB file :
Tito_Scwrl_1JNR.pdb
: