Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKML---DVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEI--ICAERKL
2GLV Chain:K ((26-171))
---IEHILQILPHRYPMLLVDRITELQ-ANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVAFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE-
General information:
TITO was launched using:
RESULT:
Template:
2GLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119287 for 1042 contacts (-114.5/contact) +
2D Compatibility (PS) -15067 + (NN) -5282 + (LL) 720
1D Compatibility (HY) -16000 + (ID) 3500
Total energy: -158416.0 ( -152.03 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2GLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GLV-query.scw
PDB file :
Tito_Scwrl_2GLV.pdb
: