Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRLENRVALVTGAGQGIGRAIAECFAAEGARVLLATRTASRGQAVLEAIRLGGGTAELLAVDLSEYDAARRAVSATLERFGQLDILLHNAAAFPQCALAELDEGTLERTLAVNLKSCFRLTQAALPALRRSVAGRVLVTSSVTGPRTAIPGLSHYAASKAGVNGFIRAAALELAGDGITVNGVEPGLVATPALGSLGDA--------AALAAHIPLGRVGQPLDIAHAMLFLASDEASYITGQTLVVDGGALLPENGGLA
4BMS Chain:E ((2-245))
-YRLLNKTAVITGGNSGIGLATAKRFVAEGAYVFIVGR---RRKELEQAAAEIGRNVTAVKADVTKLEDLDRLYAIVREQRGSIDVLFANSGAIEQKTLEEITPEHYDRTFDVNVRGLIFTVQKALPLLRD--GGSVILTSSVAGV-LGLQAHDTYSAAKAAVRSLARTWTTELKGRSIRVNAVSPGAIDTPIIEN-VSTQEEADELRAKFAAATPLGRVGRPEELAAAVLFLASDDSSYVAGIELFVDGG----------
General information:
TITO was launched using:
RESULT:
Template:
4BMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150501 for 2011 contacts (-74.8/contact) +
2D Compatibility (PS) -26050 + (NN) -11004 + (LL) 1172
1D Compatibility (HY) -14800 + (ID) 4600
Total energy: -205783.0 ( -102.33 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4BMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMS-query.scw
PDB file :
Tito_Scwrl_4BMS.pdb
: