Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLA-GKA--IDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAA-ENAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
3UWZ Chain:B ((9-253))
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFED-NGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAI---KSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDF---------
General information:
TITO was launched using:
RESULT:
Template:
3UWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144615 for 1969 contacts (-73.4/contact) +
2D Compatibility (PS) -26271 + (NN) -13211 + (LL) 336
1D Compatibility (HY) -17200 + (ID) 4800
Total energy: -205761.0 ( -104.50 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_3UWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWZ-query.scw
PDB file :
Tito_Scwrl_3UWZ.pdb
: