Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGDKLLSELGYKLGRTIGEGSYSKVKVATSKKYKGTVAIKVVDRRRAPPDFVNKFLP---RELSILRGVRHPHIVHVFEFIEVCNGKLYIVME-AAATDLLQAVQRNGRIPGVQARDLFAQIAGAVRYLHDHHLVHRDLKCENVLLSPDERR--VKLTDFGFGRQAHGYPDLSTTYCGSAAYASPEVLLGI---PYDPKKYDVWSMGVVLYVMVTGCMPFDDSDIAGLPRRQKRGVLY---PE-GLELSERCKALIAELLQFSPSARPSAGQVARNCWLRAGDSG |
| 2YCQ Chain:A ((12-282)) | -----------YIMSKTLGSGACGEVKLAFERKTCKKVAIKIISK-------------NVETEIEILKKLNHPCIIKIKNFFDAED--YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK-ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYN-RAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142855 for 1723 contacts (-82.9/contact) +
2D Compatibility (PS) -25940 + (NN) -10199 + (LL) 764
1D Compatibility (HY) -22800 + (ID) 4400
Total energy: -205430.0 ( -119.23 by residue)
QMean score : 0.421
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