Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
2WKQ Chain:A ((153-284))
KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEK----
General information:
TITO was launched using:
RESULT:
Template:
2WKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67359 for 907 contacts (-74.3/contact) +
2D Compatibility (PS) -14001 + (NN) -3200 + (LL) 108
1D Compatibility (HY) -19200 + (ID) 4800
Total energy: -108452.0 ( -119.57 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_2WKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WKQ-query.scw
PDB file :
Tito_Scwrl_2WKQ.pdb
: