Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLFLALVGAAVAFPVDDDDKIVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN
1H4W Chain:A ((1-223))
-----------------------IVGGYTCEENSLPYQVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAVKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN
General information:
TITO was launched using:
RESULT:
Template:
1H4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150991 for 1903 contacts (-79.3/contact) +
2D Compatibility (PS) -24719 + (NN) -12610 + (LL) 2020
1D Compatibility (HY) -28000 + (ID) 8650
Total energy: -222950.0 ( -117.16 by residue)
QMean score : 0.850
(partial model without unconserved sides chains):
PDB file :
Tito_1H4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H4W-query.scw
PDB file :
Tito_Scwrl_1H4W.pdb
: