Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSIAK-KCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
4MU8 Chain:B ((3-108))
--------------------------------------------------------------FKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFG-RHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPAKYIPGTKMAFGGLKKEKDRNDLITYLKKASE-------
General information:
TITO was launched using:
RESULT:
Template:
4MU8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31368 for 764 contacts (-41.1/contact) +
2D Compatibility (PS) -11555 + (NN) -7057 + (LL) 5924
1D Compatibility (HY) -7200 + (ID) 1850
Total energy: -53106.0 ( -69.51 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_4MU8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MU8-query.scw
PDB file :
Tito_Scwrl_4MU8.pdb
: