Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAKKGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEGICDIDGGKLYQREDDNPETVANRLSVNIKQSKPILDFYDQKGVLKNIDGSKDISDVTKDVIDILDHL
2C9Y Chain:A ((20-220))
---VLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEYYRKRGIHSAIDASQ-----TPDVV------
General information:
TITO was launched using:
RESULT:
Template:
2C9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66272 for 1403 contacts (-47.2/contact) +
2D Compatibility (PS) -21584 + (NN) -13113 + (LL) 996
1D Compatibility (HY) -14800 + (ID) 4250
Total energy: -119023.0 ( -84.83 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2C9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C9Y-query.scw
PDB file :
Tito_Scwrl_2C9Y.pdb
: