Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVVKDIVKNFGEGLSETKVLKGINFEVEQGEFVILNGASGSGKTTLLTILGGLLSQTSGTVLYN--DAPLFDKQHRPSDLRLEDIGFIFQSSHLVPYLKVIEQLTLVGQEAGMTKQQSSTRAIQLLKNIGLEDRLN--------VYPHQ---LSGGEKQRVAIMRAFMNNPKIILADEPTASLDADRATKVVEMIRQQIKEQQMIGIMITHDRRLFEYADRVIELEDGKITD
1XEF Chain:C ((18-217))
--------------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----PNWLRRQ-VGVVLQDNVLLNR-SIIDNISLA--NPGM----SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTV--IIIAARLSTVKNADRIIVMEKGKIVE
General information:
TITO was launched using:
RESULT:
Template:
1XEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116769 for 1381 contacts (-84.6/contact) +
2D Compatibility (PS) -20388 + (NN) -8243 + (LL) 2304
1D Compatibility (HY) -16400 + (ID) 3350
Total energy: -162846.0 ( -117.92 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1XEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XEF-query.scw
PDB file :
Tito_Scwrl_1XEF.pdb
: