Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVALGVLAFANVLMATD-VKALV--------KGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGANK----NPVMTAQAKKLSDEDIKALAKYIPTLK
1M70 Chain:A ((100-190))
------------------AKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH
General information:
TITO was launched using:
RESULT:
Template:
1M70.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21160 for 522 contacts (-40.5/contact) +
2D Compatibility (PS) -8191 + (NN) -1345 + (LL) 2356
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -31790.0 ( -60.90 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_1M70.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M70-query.scw
PDB file :
Tito_Scwrl_1M70.pdb
: