Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceLTEEVRCIGCGAVIQTEDPDKIGYAPKSSLNNEQVICKRCFRLKHYNEIQDVALTDDDFL-RILNQI-SSKQALIVYVVD----IFDFDGSWLPGLPRFAGSNPVLLVGNKEDVLPKSLKRDKLTRWMRTRAKEQGLAATDVVLVSAEKGHGFDT-LLEKIDELRNGQD-------------VYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLD--KIEIPLADGNVLVDTPGIINHHQMAH------FID-----TTTLKA-ITP-KKEVKPAVFQLN---------EEQTLFLGALARLDYVSGGRKSLVVYVSNNLPIHR-TKL-EKAEALYEK---QAGLVLQPPTEEDMKTLPKLVPYSFTVKEKA---DIVFS-------GLGWVTIPEGGAKVTAWVPEGVSATIRTSLV-
1MKY Chain:A ((2-439))--ATVLIVGRPNVGKSTLFNKLV---KDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREFERE--------VKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAIL----NKERALVSPIPVDDEVFIDGRKYVFVDTAGLEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR


General information:
TITO was launched using:
RESULT:

Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79262 for 2528 contacts (-31.4/contact) +
2D Compatibility (PS) -37327 + (NN) -3444 + (LL) 1376
1D Compatibility (HY) -9200 + (ID) 3150
Total energy: -131007.0 ( -51.82 by residue)
QMean score : 0.225

(partial model without unconserved sides chains):
PDB file : Tito_1MKY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1MKY-query.scw
PDB file : Tito_Scwrl_1MKY.pdb: