Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLEKVNEAVAKIRESYTGTPKIGLILGSGLGVLADEVNQPIKLSYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKELGVEVLIVTNAAGGVNELYSAGDLMLISDHINFTGTSPLIGPNDEHFGPRFPDMSEAYNLALRVDARLIAQELNLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVIIANHAGLRVLGISCITNMAAGILDQPLSHTEVIETTDQVRSTFLQYVKAIVAKIS
3ODG Chain:A ((25-281))
---------IQKIKPGFK--PQIAFILGSGLGDLVDQITNDTTISYADIPGFPVSSVHGHAGELVLGDLCGVPVMCMKGRGHFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVLPGSVVMLKDHINTMPGTPLVGPNDDRFGPRFFSLANAYDKDLRADMAKIAQQLDIPLTEGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITNLAEGLSDVVLSHEQTLKFAKVASVNFTKLIEAFL----
General information:
TITO was launched using:
RESULT:
Template:
3ODG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -198474 for 2199 contacts (-90.3/contact) +
2D Compatibility (PS) -27078 + (NN) -7319 + (LL) 1148
1D Compatibility (HY) -25200 + (ID) 5800
Total energy: -262723.0 ( -119.47 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_3ODG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ODG-query.scw
PDB file :
Tito_Scwrl_3ODG.pdb
: