Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQDIQDVYADVKDLLGGLKK
4JLO Chain:B ((1-203))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG---NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPP-PPGV------KVIQKEDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG----
General information:
TITO was launched using:
RESULT:
Template:
4JLO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90278 for 1548 contacts (-58.3/contact) +
2D Compatibility (PS) -22405 + (NN) -15126 + (LL) 80
1D Compatibility (HY) -20000 + (ID) 4750
Total energy: -152479.0 ( -98.50 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_4JLO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLO-query.scw
PDB file :
Tito_Scwrl_4JLO.pdb
: