Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETK-AFDQIDNAPEERQRGITINIAHVEYQTDK-----------RHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHVLLARQVGVPYILVALNKADAVDDEELLELVEMEVREL--LAAQEFDEDAPVVRVSALKALEGDAKWVASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGT--------VVTGRVERGVINVNEEVEIV-GIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVVTKPGTTTPHTEFEGQVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDNTNISVKLIQPVAMDEGLRFAIREGGRTVGAGRVTKIIK |
3PEN Chain:A ((2-248)) | -----WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPE----------AYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALS----QYRQIKQFTKGTWAENVPIIPVSALHKI--------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLR-------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PEN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57766 for 1636 contacts (-35.3/contact) +
2D Compatibility (PS) -24359 + (NN) -12609 + (LL) 10400
1D Compatibility (HY) -20800 + (ID) 4300
Total energy: -109434.0 ( -66.89 by residue)
QMean score : 0.416
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