Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
1RL4 Chain:A ((10-168))
----KIVKYPDPILRRRSEEVTNFDDNLKRVVRKMFDIMYESKGIGLSAPQVNISKRIIVWN--------RIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLNELIRD--
General information:
TITO was launched using:
RESULT:
Template:
1RL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73043 for 1125 contacts (-64.9/contact) +
2D Compatibility (PS) -15450 + (NN) -2552 + (LL) 1076
1D Compatibility (HY) -15200 + (ID) 3000
Total energy: -108169.0 ( -96.15 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1RL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL4-query.scw
PDB file :
Tito_Scwrl_1RL4.pdb
: