Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARPLAMIAALGENRAIGIDNRLPWRLPADLKHFKAMTLGKPVIMGRKTWDSLGRPLPGRLNLVVSRQAGLALEGAEVFASLDAALARAEAWAQAEDADELMLIGGAQLYAEALPRAARLYLTRVGLAPEGDAFFPEIDGAAWR-LASSIEHAAADDAPAYAFEVWERR
4OSG Chain:D ((2-159))
----ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPG-SDDRVQWVSSVE------EAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
General information:
TITO was launched using:
RESULT:
Template:
4OSG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79821 for 1110 contacts (-71.9/contact) +
2D Compatibility (PS) -16498 + (NN) 414 + (LL) 1340
1D Compatibility (HY) -16000 + (ID) 3650
Total energy: -114215.0 ( -102.90 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_4OSG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OSG-query.scw
PDB file :
Tito_Scwrl_4OSG.pdb
: