Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRPLVAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLA-GKA--IDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGETRAEREAGKTLEVVARQLGSVIDELGVGAFARAVVAYEPVWAIGTGLTASPAQAQEVHAAIRAQLAA-ENAEVAKGVRLLYGGSVKAASAAELFGMPDIDGGLVGGASLNADEFGAICRAAGS
3UWZ Chain:A ((9-253))
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFED-NGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDF---------
General information:
TITO was launched using:
RESULT:
Template:
3UWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140014 for 1994 contacts (-70.2/contact) +
2D Compatibility (PS) -26722 + (NN) -13050 + (LL) 628
1D Compatibility (HY) -17200 + (ID) 4950
Total energy: -201308.0 ( -100.96 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3UWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWZ-query.scw
PDB file :
Tito_Scwrl_3UWZ.pdb
: