Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEILIAGGSGFLGKQIIKAALTKGHKVAYLSRHEGKGDIFKDPRLTYIRGDITEADKIHLEDR--TFDILIDCIGAIKPN-----Q--LDELNVKATQKAVALCHKNQ-IPKLVYISANSG------------------Y-SAYIKSKRKAEQIIKA----SGLDYLFVRPGLMYGEERPLS----IFQAKCIKL--FSHLP--FLGIVVQKVFPTKVVIVAEAIVTTLRKKPTQKILSIEELNNK |
2PK3 Chain:A ((13-248)) | MRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAK----LPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYGKTGDVYNVCSGIGT |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PK3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89490 for 1501 contacts (-59.6/contact) +
2D Compatibility (PS) -21404 + (NN) -15016 + (LL) 324
1D Compatibility (HY) -4000 + (ID) 1800
Total energy: -131386.0 ( -87.53 by residue)
QMean score : 0.533
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