Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGAAAHSISPRAVWQFRNMIKCTIPGSDPLKDYNNYGCYCGLGGWGTPVDDLDRCCQTHDHCYSQAKKLESCKFLIDNPYTNTYSYSCSGSEITCSAKNNKCEDFICNCDREAAICFSK--VPYNKEYKNLDTGKFC
4HG9 Chain:A ((1-115))
----------------------HLLQFRKMIKKM-TGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKV---TGC-----DPKWDDYTYSWKDGDIVCG-GDDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDI-LC
General information:
TITO was launched using:
RESULT:
Template:
4HG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47482 for 840 contacts (-56.5/contact) +
2D Compatibility (PS) -12298 + (NN) -10083 + (LL) 3440
1D Compatibility (HY) -10000 + (ID) 2400
Total energy: -78823.0 ( -93.84 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_4HG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HG9-query.scw
PDB file :
Tito_Scwrl_4HG9.pdb
: