Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
2J0V Chain:A ((8-129))
-KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS--RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDK-------------
General information:
TITO was launched using:
RESULT:
Template:
2J0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71521 for 787 contacts (-90.9/contact) +
2D Compatibility (PS) -12873 + (NN) -7396 + (LL) 1292
1D Compatibility (HY) -15200 + (ID) 3550
Total energy: -109248.0 ( -138.82 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_2J0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J0V-query.scw
PDB file :
Tito_Scwrl_2J0V.pdb
: