Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
2J0V Chain:A ((8-181))
-KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYS--RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYL----ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP------------
General information:
TITO was launched using:
RESULT:
Template:
2J0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139704 for 1344 contacts (-103.9/contact) +
2D Compatibility (PS) -18355 + (NN) -8827 + (LL) 1696
1D Compatibility (HY) -18800 + (ID) 4500
Total energy: -188490.0 ( -140.25 by residue)
QMean score : 0.700
(partial model without unconserved sides chains):
PDB file :
Tito_2J0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J0V-query.scw
PDB file :
Tito_Scwrl_2J0V.pdb
: