Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKSINHICFSVRNLNDSIHFYRDILLGKLLLTGKKTAYFELAGLWIALNEEKDIPRNEIHFSYTHIAFTIDDSEFKYWHQRLKDNNVNILEGRVRDIRDRQSIYFTDPDGHKLELHTGTLENRLNYYKEAKP-HMTFYK
1NKI Chain:A ((1-133))
MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQY--GGPAADYTHYAFGIAAADFARFAAQLRAHGVREWKQN---RSEGDSFYFLDPDGHRLEAHVGDLRSRLAACRQAPYAGMRF--
General information:
TITO was launched using:
RESULT:
Template:
1NKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63507 for 865 contacts (-73.4/contact) +
2D Compatibility (PS) -13955 + (NN) -1888 + (LL) 332
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -92668.0 ( -107.13 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1NKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NKI-query.scw
PDB file :
Tito_Scwrl_1NKI.pdb
: