Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLNNYSLKVKN-KQLVDNCDLNFYLGQINHIVGKNGVGKSLLAKDFL--LNN-SGNIPKSIS-------QNVTLISSSSNIPNDIT-------KDFLLSLLKSKF----ENNRQTFDKIYNILNIEAIPSNVLLKNLSDGQKQKLKLLSFLLEDHDLIILDEVTNALDKKTVNEIYEFLNDFIQSHQTKTIINITHNLSDLSALPGKYFIFKDLQIEEYQSKEEVINDYINL
3GFO Chain:A ((8-236))
LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE--
General information:
TITO was launched using:
RESULT:
Template:
3GFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107763 for 1600 contacts (-67.4/contact) +
2D Compatibility (PS) -21778 + (NN) -5396 + (LL) 112
1D Compatibility (HY) -12400 + (ID) 2550
Total energy: -149775.0 ( -93.61 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3GFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFO-query.scw
PDB file :
Tito_Scwrl_3GFO.pdb
: