Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKS---NLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETNIKITAAPMIEKSGDLAAILTN------LQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATTR--AGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAK-------LNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNS--SLMDLSITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPKTHALLKIPTLNPQTLF |
| 3PVS Chain:A ((14-243)) | --------------QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-----GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG-VKEIREAIERARQNRNAGRRTILFVDEVHRF------AFLPHIEDG--------------------TITFIGATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGER |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98347 for 1491 contacts (-66.0/contact) +
2D Compatibility (PS) -21259 + (NN) -711 + (LL) 3804
1D Compatibility (HY) -9600 + (ID) 2700
Total energy: -128813.0 ( -86.39 by residue)
QMean score : 0.500
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