Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLEIVVETILSAIKSS-SKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTAKERVLGRSR------------------------------GADDNERVFHNRMRVFLDPLVEIQNFYKAKHLHKIINGERSIEEIVNEMQKYILSFAN
3TLX Chain:A ((29-242))
-DGRYIFLGAPGSGKGTQSLNLKKSH--CYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQK-NQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHIDG---
General information:
TITO was launched using:
RESULT:
Template:
3TLX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70605 for 1392 contacts (-50.7/contact) +
2D Compatibility (PS) -20431 + (NN) -12237 + (LL) 652
1D Compatibility (HY) -10800 + (ID) 3000
Total energy: -116421.0 ( -83.64 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_3TLX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TLX-query.scw
PDB file :
Tito_Scwrl_3TLX.pdb
: